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#!/bin/bash
#PBS -N jupyterNotebook
#PBS -m abe
#PBS -M myEmail@griffithuni.edu.au
#PBS -q workq
#PBS -l select=1:ncpus=1:mem=12gb,walltime=5:00:00
module load anaconda3/2021.11
# get tunneling info
XDG_RUNTIME_DIR=""
node=$(hostname -s)
user=$(whoami)
cluster="gc-prd-hpclogin1"
port=8889
# print tunneling instructions jupyter-log
echo -e "
Command to create ssh tunnel:
ssh -N -f -L ${port}:${node}:${port} ${user}@${cluster}.rcs.griffith.edu.au
Use a Browser on your local machine to go to:
localhost:${port} (prefix w/ https:// if using password)"
"
cd $PBS_O_WORKDIR
# load modules or conda environments here
module load anaconda3/2020.11
source activate myenv
# Run Jupyter
jupyter-notebook --no-browser --port=${port} --ip=${node} |
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