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module load anaconda3/2019.07py3
This should have packages like the tensorflow env. You can find with this:
conda info --envs
>>>>>
conda info --envs
# conda environments:
#
/sw/anaconda2/2019.07/envs/bio
/sw/anaconda2/2019.07/envs/bioinfoPy27
base * /sw/anaconda3/2019.07
3point6 /sw/anaconda3/2019.07/envs/3point6
R /sw/anaconda3/2019.07/envs/R
bioinformatics /sw/anaconda3/2019.07/envs/bioinformatics
>>>>>>>
This will give the packages in the base:
conda list
source activate 3point6
Next run: " conda list"
This will list the packages installed in that environment.
It shows among many others:
pytorch 1.3.1 cuda100py36h53c1284_0
tensorboard 2.0.0 pyhb230dea_0
tensorflow 2.0.0 mkl_py36hef7ec59_0
tensorflow-base 2.0.0 mkl_py36h9204916_0
tensorflow-estimator 2.0.0 pyh2649769_0
termcolor 1.1.0 py_2 conda-forge
theano 1.0.4 py36hf484d3e_1000 conda-forge
Remember this cluster has no GPU (currently) |
Another sample pbs file
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#!/bin/bash
#PBS -N condatest
#PBS -m abe
#PBS -M YourEMAIL@griffith.edu.au
#PBS -l select=1:ncpus=1:mem=4gb,walltime=10:00:00
module load anaconda3/2019.07py3
source activate bioinformatics
trinity <trinityinput>
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