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PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it implements a statistical test for minimizing false-positive results. Together with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on a standard desktop computer.

Usage

module load bioinformatics/pear/pear

Installation

 cdmodule load library/zlib/1.2.8

cd /sw/bioinformatics/pear
cd PEAR
./autogen.sh
./configure --prefix=/sw/bioinformatics/pear/PEAR  --disable-zlib  2>&1 | tee configureLog.txt
make 2>&1 | tee makeLog.txt
make install 2>&1 | tee makeInstallLog.txt

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