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Had to remove libtool from system and use the latest... yum remove libtool
svn co https://svn.oss.deltares.nl/repos/delft3d/trunk delft3trunk
module load library/libtool/2.4.2
module load mpi/mpich2/2.1.4.1p1-gnu
cd /sw/Delft3D/delft3d_repository/src
./autogen.sh -v
./configure --prefix=`pwd` CC=icc CXX=icpc
ldd libflow2d3d.so
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
cd /sw/Delft3D/src
unzip D3D_trunk.zip
module load intel-ComposerXE/2015.2.164
module load intel-mpi/5.0.3.048
module load compilers/autoconf-2.69
#module load NetCDF/4.2.1.1
module load NetCDF/4.3.3.1-intel_2015
#export NETCDF_CFLAGS=/sw/NetCDF/4.2.1.1/include
export NETCDF_CFLAGS=/sw/NetCDF/4.3.3.1/ComposerXE2015/include
#export NETCDF_LIBS=/sw/NetCDF/4.2.1.1/lib
export NETCDF_LIBS=/sw/NetCDF/4.3.3.1/ComposerXE2015/lib
export I_MPI_F90=ifort
export I_MPI_F77=ifort
cd /sw/Delft3D/src/trunk2/src
sh autogen.sh -v 2>&1 | tee autoconfigLog.txt
CFLAGS='-O2' CXXFLAGS='-O2' FFLAGS='-O2' FCFLAGS='-O2' ./configure --prefix=/sw/Delft3D/unknown 2>&1 | tee configureLog.txt
>>>>>>>>>
chmod +x ./scripts_lgpl/linux/update_version.sh
chmod +x ./scripts_lgpl/linux/make_revision.sh
>>>>>>>>>
make 2>&1 | tee makeLog.txt
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