make
[  0%] Running C++/Python protocol buffer compiler on /sw/caffe/caffe-master/src/caffe/proto/caffe.proto
Scanning dependencies of target proto
[  1%] Building CXX object src/caffe/CMakeFiles/proto.dir/__/__/include/caffe/proto/caffe.pb.cc.o
[  1%] Linking CXX static library ../../lib/libproto.a
[  1%] Built target proto
[  1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/cuda_compile_generated_math_functions.cu.o
[  1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_absval_layer.cu.o
[  1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_base_data_layer.cu.o
[  2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_batch_norm_layer.cu.o
[  2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_batch_reindex_layer.cu.o
[  2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_bias_layer.cu.o
[  4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_bnll_layer.cu.o
[  4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_concat_layer.cu.o
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[  5%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_conv_layer.cu.o
[  5%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_crop_layer.cu.o
[  6%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_cudnn_conv_layer.cu.o
[  6%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_cudnn_lcn_layer.cu.o
[  6%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_cudnn_lrn_layer.cu.o
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[  8%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_cudnn_relu_layer.cu.o

snip <<< CLIP

[ 79%] Building CXX object src/caffe/CMakeFiles/caffe.dir/util/upgrade_proto.cpp.o
[ 80%] Linking CXX shared library ../../lib/libcaffe.so
[ 80%] Built target caffe
Scanning dependencies of target convert_imageset
[ 80%] Building CXX object tools/CMakeFiles/convert_imageset.dir/convert_imageset.cpp.o
[ 80%] Linking CXX executable convert_imageset
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::Mat::Mat(cv::Mat const&, cv::Rect_<int> const&)'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::Mat::copySize(cv::Mat const&)'
/sw/library/atlas/3.10.2/lib/liblapack.so: undefined reference to `_gfortran_transfer_character'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::imread(cv::String const&, int)'
/sw/library/atlas/3.10.2/lib/liblapack.so: undefined reference to `_gfortran_st_write_done'
../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::String::allocate(unsigned long)'
/sw/library/atlas/3.10.2/lib/liblapack.so: undefined reference to `_gfortran_transfer_integer'
/sw/library/atlas/3.10.2/lib/liblapack.so.0.0-rc3: undefined reference to `_gfortran_compare_string`cv::String::allocate(unsigned long)'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::String::deallocate()'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::imencode(cv::String const&, cv::_InputArray const&, std::vector<unsigned char, std::allocator<unsigned char> >&, std::vector<int, std::allocator<int> > const&)'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::Mat::deallocate()'
/sw/library/atlas/3.10.2/lib/liblapack.so)'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `_gfortran_stop_numeric`cv::Mat::deallocate()'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::imdecode(cv::_InputArray const&, int)'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::fastFree(void*)'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::resize(cv::_InputArray const&, cv::_OutputArray const&, cv::Size_<int>, double, double, int)'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to `cv::flip(cv::_InputArray const&, cv::_OutputArray const&, int)'
/sw/library/atlas/3.10.2/lib/liblapack.so: undefined reference to `_gfortran_st_write'
collect2: ld returned 1 exit status
make[2]: *** [tools/convert_imageset] Error 1
make[1]: *** [tools/CMakeFiles/convert_imageset.dir/all] Error 2
make: *** [all] Error 2