...
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rpm -ivh /tmp/libmpc-devel-0.8-3.el6.x86_64.rpm /tmp/libmpc-0.8-3.el6.x86_64.rpm Preparing... ########################################### [100%] 1:libmpc ########################################### [ 50%] 2:libmpc-devel ########################################### [100%] |
Actual Compilation
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cd /sw/caffe/caffe-master/build cmake -D CMAKE_INSTALL_PREFIX=/sw/caffe/caffe -DBUILD_SHARED_LIBS=ON -DBUILD_matlab=ON -DMATLAB_DIR=/sw/Matlab/R2015b -DMatlab_mexext=/sw/Matlab/R2015b/bin/mex -DMatlab_mex=/sw/Matlab/R2015b/bin/mex -DMatlab_DIR=/sw/Matlab/R2015b -DOctave_DIR=/sw/octave/3.8.0 -DCUDNN_INCLUDE="/sw/cuda/cuda_7.5.18/include" -DCUDNN_LIBRARY="/sw/cuda/cuda_7.5.18/lib64/libcudnn.so" -DAtlas_LAPACK_LIBRARY=/sw/library/lapack/lapack-3.6.0/3.6.0/lib64/liblapack.so -lopencv_imgcodecs .. 2>&1 | tee cmakelog.txt PS: Please NOTE that It needs version 4.4X of gcc to compile the first part due to the version of boost, cuda etc on this cluster make >2&1 | tee makelog.txt You will get an error at nearly 100% . It is due to matlab2015a stuff needing gcc compiler version 4.7X. At this point onlym just do this: module load compilers/gcc-4.7.1 make 2>&1 | tee makelog2.txt make install 2>&1 | tee makeInstalllog.txt |
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>>>>>>>>>
cmake -D CMAKE_INSTALL_PREFIX=/sw/caffe/caffe -DBUILD_SHARED_LIBS=ON -DBUILD_matlab=ON -DMATLAB_DIR=/sw/Matlab/R2015b -DMatlab_mexext=/sw/Matlab/R2015b/bin/mex -DMatlab_mex=/sw/Matlab/R2015b/bin/mex -DMatlab_DIR=/sw/Matlab/R2015b -DOctave_DIR=/sw/octave/3.8.0 -DCUDNN_INCLUDE="/sw/cuda/cuda_7.5.18/include" -DCUDNN_LIBRARY="/sw/cuda/cuda_7.5.18/lib64/libcudnn.so" -DAtlas_LAPACK_LIBRARY=/sw/library/lapack/lapack-3.6.0/3.6.0/lib64/liblapack.so -lopencv_imgcodecs .. 2>&1 | tee cmakelog.txt
-- The C compiler identification is GNU 4.4.7
-- The CXX compiler identification is GNU 4.4.7
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.60.0
-- Found the following Boost libraries:
-- system
-- thread
-- filesystem
-- chrono
-- date_time
-- atomic
-- Found GFlags: /sw/caffe/gflags/usr/local/include
-- Found gflags (include: /sw/caffe/gflags/usr/local/include, library: /sw/caffe/gflags/usr/local/lib/libgflags.a)
-- Found Glog: /sw/caffe/glog/0.3.3/include
-- Found glog (include: /sw/caffe/glog/0.3.3/include, library: /sw/caffe/glog/0.3.3/lib/libglog.so)
-- Found PROTOBUF: /sw/caffe/protobuf/lib/libprotobuf.so
-- Found PROTOBUF Compiler: /sw/caffe/protobuf/bin/protoc
-- Found HDF5: /sw/library/hdf5/1.8.7/lib/libhdf5_hl.so;/sw/library/hdf5/1.8.7/lib/libhdf5.so;/usr/lib64/libz.so;/usr/lib64/libm.so (found version "1.8.7")
-- Found LMDB: /sw/caffe/lmdb/usr/local/include
-- Found lmdb (include: /sw/caffe/lmdb/usr/local/include, library: /sw/caffe/lmdb/usr/local/lib/liblmdb.so)
-- Found LevelDB: /sw/caffe/leveldb/include
-- Found LevelDB (include: /sw/caffe/leveldb/include, library: /sw/caffe/leveldb/lib/libleveldb.so)
-- Found Snappy: /sw/caffe/snappy/include
-- Found Snappy (include: /sw/caffe/snappy/include, library: /sw/caffe/snappy/lib/libsnappy.so)
-- CUDA detected: 7.5
-- Found cuDNN: ver. 4.0.7 found (include: /sw/cuda/cuda_7.5.18/include, library: /sw/cuda/cuda_7.5.18/lib64/libcudnn.so)
-- Added CUDA NVCC flags for: sm_20
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.23")
-- Checking for module 'opencv'
-- Found opencv, version 3.1.0
-- Checking for module 'opencv'
-- Found opencv, version 3.1.0
-- LIBS3.1.0
-- OpenCV found ()
-- Found Atlas: /sw/library/atlas/3.10.2/include
-- Found Atlas (include: /sw/library/atlas/3.10.2/include, library: /sw/library/atlas/3.10.2/lib/libatlas.so)
-- Found PythonInterp: /sw/python/2.7.1-shared/bin/python2.7 (found suitable version "2.7.1", minimum required is "2.7")
-- Found PythonLibs: /sw/python/2.7.1-shared/lib/libpython2.7.so (found suitable version "2.7.1", minimum required is "2.7")
-- Found NumPy: /sw/python/2.7.1-shared/lib/python2.7/site-packages/numpy-1.12.0.dev0+1380fdd-py2.7-linux-x86_64.egg/numpy/core/include (found suitable version "1.12.0.dev0+1380fdd", minimum required is "1.7.1")
-- NumPy ver. 1.12.0.dev0+1380fdd found (include: /sw/python/2.7.1-shared/lib/python2.7/site-packages/numpy-1.12.0.dev0+1380fdd-py2.7-linux-x86_64.egg/numpy/core/include)
-- Boost version: 1.60.0
-- Found the following Boost libraries:
-- python
dirname: missing operand
Try `dirname --help' for more information.
dirname: missing operand
Try `dirname --help' for more information.
-- Found MatlabMex: /sw/Matlab/R2015b/bin/mex
-- Found Doxygen: /usr/bin/doxygen (found version "1.6.1")
Not enough input arguments.
-- Detected Doxygen OUTPUT_DIRECTORY: ./doxygen/
-- Found Git: /usr/bin/git (found version "1.7.1")
--
-- ******************* Caffe Configuration Summary *******************
-- General:
-- Version : 1.0.0-rc3
-- Git : unknown
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- Release CXX flags : -O3 -DNDEBUG -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Debug CXX flags : -g -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Build type : Release
--
-- BUILD_SHARED_LIBS : ON
-- BUILD_python : ON
-- BUILD_matlab : ON
-- BUILD_docs : ON
-- CPU_ONLY : OFF
-- USE_OPENCV : ON
-- USE_LEVELDB : ON
-- USE_LMDB : ON
-- ALLOW_LMDB_NOLOCK : OFF
--
-- Dependencies:
-- BLAS : Yes (Atlas)
-- Boost : Yes (ver. 1.60)
-- glog : Yes
-- gflags : Yes
-- protobuf : Yes (ver. 3.0.0)
-- lmdb : Yes (ver. 0.9.70)
-- LevelDB : Yes (ver. 1.18)
-- Snappy : Yes (ver. 1.1.3)
-- OpenCV : Yes (ver. 3.1.0)
-- CUDA : Yes (ver. 7.5)
--
-- NVIDIA CUDA:
-- Target GPU(s) : Auto
-- GPU arch(s) : sm_20
-- cuDNN : Yes (ver. 4.0.7)
--
-- Python:
-- Interpreter : /sw/python/2.7.1-shared/bin/python2.7 (ver. 2.7.1)
-- Libraries : /sw/python/2.7.1-shared/lib/libpython2.7.so (ver 2.7.1)
-- NumPy : /sw/python/2.7.1-shared/lib/python2.7/site-packages/numpy-1.12.0.dev0+1380fdd-py2.7-linux-x86_64.egg/numpy/core/include (ver 1.12.0.dev0+1380fdd)
--
-- Matlab:
-- Matlab : Yes (/sw/Matlab/R2015b/bin/mex, /sw/Matlab/R2015b/bin/mex
-- Octave : Yes (/sw/octave/3.8.0/bin/mkoctfile)
-- Build mex using : Matlab
--
-- Documentaion:
-- Doxygen : /usr/bin/doxygen (1.6.1)
-- config_file : /sw/caffe/caffe-master/.Doxyfile
--
-- Install:
-- Install path : /sw/caffe/caffe
--
-- LIBS3.1.0
-- Found Matlab: /sw/Matlab/R2015b/extern/include (found version "8.6")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
MATLAB_DIR
Octave_DIR
-- Build files have been written to: /sw/caffe/caffe-master/build
>>>>>>>>> |
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First attempt:
make
make 2>&1 | tee makelog.txt
[ 0%] Running C++/Python protocol buffer compiler on /sw/caffe/caffe-master/src/caffe/proto/caffe.proto
Scanning dependencies of target proto
[ 1%] Building CXX object src/caffe/CMakeFiles/proto.dir/__/__/include/caffe/proto/caffe.pb.cc.o
[ 1%] Linking CXX static library ../../lib/libproto.a
[ 1%] Built target proto
[ 1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/cuda_compile_generated_math_functions.cu.o
[ 1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_absval_layer.cu.o
[ 1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_base_data_layer.cu.o
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_batch_norm_layer.cu.o
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_batch_reindex_layer.cu.o
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_bias_layer.cu.o
[ 4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_bnll_layer.cu.o
[ 4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_concat_layer.cu.o
[ 5%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_contrastive_loss_layer.cu.o
[ 5%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_conv_layer.cu.o
[ 5%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_crop_layer.cu.o
[ 6%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/cuda_compile_generated_cudnn_conv_layer.cu.o
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