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module load R/3.34.30 module load python/2.7.10 pip install numpy rpy2 decorator nose sphinx wget http://bmi.osu.edu/hpc/software/BiBench-0.2.tar.gz python setup.py build 2>&1 | tee pythonBuildLog.txt python setup.py install 2>&1 | tee pythonInstallLog.txt install.packages('biclust', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('isa2', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('MASS', dependencies=TRUE, repos='http://cran.rstudio.com/') ###install.packages('Bioconductor', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('fabia', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('GEOquery', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('GEOmetadb', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('GOstats', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('GO.db', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('multtest', dependencies=TRUE, repos='http://cran.rstudio.com/') install.packages('pcaMethods', dependencies=TRUE, repos='http://cran.rstudio.com/') |
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