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module load R/3.4.0
module load python/2.7.10
pip install numpy rpy2 decorator nose sphinx
wget http://bmi.osu.edu/hpc/software/BiBench-0.2.tar.gz
python setup.py build 2>&1 | tee pythonBuildLog.txt
python setup.py install 2>&1 | tee pythonInstallLog.txt
install.packages('biclust', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('isa2', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('MASS', dependencies=TRUE, repos='http://cran.rstudio.com/')
###install.packages('Bioconductor', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('fabia', dependencies=TRUE, repos='http://cran.rstudio.com/')
source("https://bioconductor.org/biocLite.R")
biocLite()
source("https://bioconductor.org/biocLite.R")
biocLite("fabia")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GEOquery")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GEOmetadb")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GOstats")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GO.db")
install.packages('GEOquery', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('GEOmetadb', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('GOstats', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('GO.db', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('multtest', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('pcaMethods', dependencies=TRUE, repos='http://cran.rstudio.com/')
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