module load R/3.4.0
module load python/2.7.10

pip install numpy rpy2 decorator nose sphinx

wget http://bmi.osu.edu/hpc/software/BiBench-0.2.tar.gz
python setup.py build 2>&1 | tee pythonBuildLog.txt
python setup.py install 2>&1 | tee pythonInstallLog.txt


install.packages('RCurl', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('XML', dependencies=TRUE, repos='http://cran.rstudio.com/')

install.packages('biclust', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('isa2', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('MASS', dependencies=TRUE, repos='http://cran.rstudio.com/')

source("https://bioconductor.org/biocLite.R")
biocLite()

source("https://bioconductor.org/biocLite.R")
biocLite("fabia")




source("http://www.bioconductor.org/biocLite.R")
biocLite("GEOquery")

source("http://www.bioconductor.org/biocLite.R")
biocLite("GEOmetadb")

source("http://www.bioconductor.org/biocLite.R")
biocLite("GOstats")

source("http://www.bioconductor.org/biocLite.R")
biocLite("GO.db")
 

source("http://www.bioconductor.org/biocLite.R")
biocLite("multtest")


source("http://www.bioconductor.org/biocLite.R")
biocLite("pcaMethods")

install.packages('GEOquery', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('GEOmetadb', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('GOstats', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('GO.db', dependencies=TRUE, repos='http://cran.rstudio.com/')

install.packages('multtest', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('pcaMethods', dependencies=TRUE, repos='http://cran.rstudio.com/')