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Pr-requisite
===========
python python-dev python-pmw python-numpy freeglut3-dev libglew-dev libpng12-dev libfreetype6-dev build-essential libxml++2.6-dev

module load python/2.7.1
module load bioinformatics/numpy/1.6.1


1 1. Install python-pmw
------------------
tar -zxvf Pmw-2.0.0.tar.gz
cd /sw/bioinformatics/PyMOL/src/Pmw-2.0.0
python setup.py build install

2. freeglut3
>>>>>>

wgetrpm -qa|grep freeglut
freeglut-2.6.0-1.el6.x86_64
freeglut-devel-2.6.0-1.el6.x86_64
>>>>>>>


 wget http://sourceforge.net/projects/pymol/files/latest/download -O pymol_source.tar.bz2
tar -xvf pymol_source.tar.bz2
cd pymol
mkdir -p /sw/bioinformatics/PyMOL
prefix=/sw/bioinformatics/PyMOL
modules=$prefix/modules
python setup.py build install --home=$prefix --install-lib=$modules --install-scripts=$prefix

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  1. http://tubiana.me/how-to-install-and-compile-pymol-windows-linux-mac/
  2. http://www.pymolwiki.org/index.php/Linux_Install