...
| No Format |
|---|
module purge module load library/zlib/1.2.8 module load library/bzip2/1.0.6fpic module load library/xz/5.3.3 module load pcre/8.39 module load misc/curl/7.53.1 module load ATLAS/3.9.39 module load jdk/1.8.0_66 module load gcc/4.9.3 module load misc/openssl/1.0.2 ./configure --prefix=/sw/R/3.4.0 '--with-cairo' '--with-jpeglib' '--with-readline' '--with-tcltk' '--with-blas' '--with-lapack' '--enable-R-profiling' '--enable-R-shlib' '--enable-memory-profiling' --enable-R-shlib --enable-BLAS-shlib LIBnn=lib64 JAVA_HOME=/sw/sdev/jdk/jdk1.8.0_66/jre LDFLAGS=" -L/sw/pcre/8.39/lib" CPPFLAGS="-I/sw/pcre/8.39/include" 2>&1 | tee log.configure_R.txt make 2>&1 | tee makeLog.txt make install 2>&1 | tee makeInstallLog.txt |
Useful Command
| No Format |
|---|
ap <- available.packages()
setRepositories()
library(devtools)
install_github("packageauthor/foobarbaz")
install_bitbucket("packageauthor/foobarbaz")
install_gitorious("packageauthor/foobarbaz")
install.packages("Rbbg", repos = "http://r.findata.org")
install.packages("lubridate", dependencies=TRUE, repos='http://cran.rstudio.com/')
source("https://bioconductor.org/biocLite.R")
biocLite("preprocessCore")
install_url("http://cran.r-project.org/src/contrib/Archive/sentiment/sentiment_0.2.tar.gz")
|
Sample PBS jobs
Serial jobs
...
1. http://yusung.blogspot.com.au/2009/01/install-jags-and-rjags-in-fedora.html