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module load cuda/7.5.18 install.packages('gpuR', dependencies=TRUE, repos='http://cran.rstudio.com/') |
R-3.3.3 Installation
Pre-Requisite
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Pre-Requisite
============
>>>>>>>>>>>Install xy to take care of lzma dependency >>>>>>>>>>>>>>>>>>>>>>>>>>
xz-5.3.3
tar -zxvf xz-5.2.3.tar.gz
./configure --prefix=/sw/library/xz/5.3.3
make -j3
make install
>>>>>>>>>>>>pcre>>>>>>>>>>>>>>>
pcre-8.39
bunzip2 pcre-8.39.tar.bz2
tar -xvf pcre-8.39.tar
./configure --enable-utf8 --prefix=/sw/pcre/8.39
make -j3
make install
>>>>>>>>curl>>>
wget https://curl.haxx.se/download/curl-7.53.1.tar.gz
./configure --prefix=/sw/misc/curl/7.53.1
make -j3
make install
>>>>>>bzip2>>>>>>>>>
got error related to bizp2
“/sw/library/bzip2/1.0.6/lib/libbz2.a: could not read symbols: Bad value”
>>
>>>>>>bzip2 fix>>>>>>>>>
cd /sw/library/bzip2/src/bzip2-1.0.6fpic
vi Makefile
CFLAGS=-Wall -Winline -O2 -g $(BIGFILES) -fPIC
make 2>&1 | tee makeLog.txt
make install PREFIX=/sw/library/bzip2/1.0.6fpic 2>&1 | tee makeInstallLog.txt
>>>>>>>
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Actual Installation
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module purge
module load library/zlib/1.2.8
module load library/bzip2/1.0.6fpic
module load library/xz/5.3.3
module load pcre/8.39
module load misc/curl/7.53.1
module load ATLAS/3.9.39
module load jdk/1.8.0_66
./configure --prefix=/sw/R/3.3.3 '--with-cairo' '--with-jpeglib' '--with-readline' '--with-tcltk' '--with-blas' '--with-lapack' '--enable-R-profiling' '--enable-R-shlib' '--enable-memory-profiling' --enable-R-shlib --enable-BLAS-shlib LIBnn=lib64 JAVA_HOME=/sw/sdev/jdk/jdk1.8.0_66/jre 2>&1 | tee log.configure_R.txt
make 2>&1 | tee makeLog.txt
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Ref: http://pj.freefaculty.org/blog/?p=315
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