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PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it implements a statistical test for minimizing false-positive results. Together with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on a standard desktop computer.
Usage
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module load bioinformatics/pear/pear |
Installation
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module load library/zlib/1.2.8 cd /sw/bioinformatics/pear cd PEAR ./autogen.sh ./configure --prefix=/sw/bioinformatics/pear --disable-zlib 2>&1 | tee configureLog.txt make 2>&1 | tee makeLog.txt make install 2>&1 | tee makeInstallLog.txt |