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http://www.repeatmasker.org/
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). On average, almost 50% of a human genomic DNA sequence currently will be masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including, cross_match, ABBlast/WUBlast, RMBlast and Decypher.
Usage
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Current Version:
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module load bioinformatics/repeatmasker/4.0.7 (gowonda)
module load bioinformatics/repeatmasker/4.0.7-gu (awoonga)
Other versions:
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module load bioinformatics/repeatmasker/3.3.0-p1
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