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Introduction
Usage
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module load misc/bibench |
Installation
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module load R/3.4.0
module load python/2.7.10
module load gsl/2.3
module load misc/bbc/bbc
module load misc/cpb/cpb
export OPSM_HOME=/sw/misc/opsm
module load misc/bicat/2.22
module load misc/qubic/1.0
module load misc/sleipnir/sleipnir
pip install numpy rpy2 decorator nose sphinx
wget http://bmi.osu.edu/hpc/software/BiBench-0.2.tar.gz
python setup.py build 2>&1 | tee pythonBuildLog.txt
python setup.py install 2>&1 | tee pythonInstallLog.txt
install.packages('RCurl', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('XML', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('biclust', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('isa2', dependencies=TRUE, repos='http://cran.rstudio.com/')
install.packages('MASS', dependencies=TRUE, repos='http://cran.rstudio.com/')
source("https://bioconductor.org/biocLite.R")
biocLite()
source("https://bioconductor.org/biocLite.R")
biocLite("fabia")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GEOquery")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GEOmetadb")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GOstats")
source("http://www.bioconductor.org/biocLite.R")
biocLite("GO.db")
source("http://www.bioconductor.org/biocLite.R")
biocLite("multtest")
source("http://www.bioconductor.org/biocLite.R")
biocLite("pcaMethods")
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