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module load matlab/2017a Older versions are: ====================2024a OR module load matlab/2015b2022b OR many older version like: module load matlab/2012b OR module load2018b Other versions available: matlab/2019b matlab/2011a2021a To get a full listing of all versions available on the cluster, please type: module avail matlab |
Matlab
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2021a
Usage
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module load matlab/2011a2021a module list Currently Loaded Modulefiles: 1) matlab/2011a Matlab will be loaded in the PATH. |
Install Directory
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/sw/Matlab/2011a2021a |
Sample PBS script
cat power_plot.m
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See http://confluence.rcs.griffith.edu.au:8080/display/GHPC/matlab#matlab-SamplePBSscript
Matlab 2017a Installation Notes
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License number: 2150 Installation folder: /sw/Matlab/R2017a Download Size: 6,885 MB Installation Size: 18,252 MB Products: MATLAB 9.2 (download) Simulink 8.9 (download) Bioinformatics Toolbox 4.8 (download) Communications System Toolbox 6.4 (download) Computer Vision System Toolbox 7.3 (download) Control System Toolbox 10.2 (download) Curve Fitting Toolbox 3.5.5 (download) DSP System Toolbox 9.4 (download) Embedded Coder 6.12 (download) Financial Toolbox 5.9 (download) Fuzzy Logic Toolbox 2.2.25 (download) Global Optimization Toolbox 3.4.2 (download) Image Acquisition Toolbox 5.2 (download) Image Processing Toolbox 10.0 (download) Mapping Toolbox 4.5 (download) MATLAB Coder 3.3 (download) MATLAB Compiler 6.4 (download) MATLAB Compiler SDK 6.3.1 (download) Model Predictive Control Toolbox 5.2.2 (download) Neural Network Toolbox 10.0 (download) Optimization Toolbox 7.6 (download) Parallel Computing Toolbox 6.10 (download) Partial Differential Equation Toolbox 2.4 (download) Robust Control Toolbox 6.3 (download) Signal Processing Toolbox 7.4 (download) SimBiology 5.6 (download) Simscape 4.2 (download) Simscape Driveline 2.12 (download) Simscape Electronics 2.11 (download) Simscape Multibody 5.0 (download) Simscape Power Systems 6.7 (download) Your installation may require additional configuration steps. 1. The following products require a supported compiler: Simulink Coder 8.12 MATLAB Coder 3.3 2. Simulink requires a C compiler for simulation acceleration, model reference, and MATLAB Function Block capabilities. It is recommended that you install a supported compiler on your machine. 3. To accelerate computations with the following products, a supported compiler is required: SimBiology 5.6 4. MATLAB Compiler SDK 6.3.1 requires the following: ? a supported compiler for creation of C and C++ Shared libraries ? a Java JDK for creation of Java packages |
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switch between the two versions
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https://www102.griffith.edu.au/products.aspx?type=search&input=matlab
How may I add all subfolders in my matlab path?
Create a file called "startup.m" with contents similar to the example below
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addpath(genpath('/export/home/s12345/scratch/GIBBON-3.5.0')) |
Please have a look at: https://au.mathworks.com/help/matlab/ref/filesep.html
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Create a path to the iofun folder on a Linux® platform.
iofun_dir = ['toolbox' filesep 'matlab' filesep 'iofun']
iofun_dir =
'toolbox/matlab/iofun' |
Another pbs script Usage Example
Open matlab (module load matlab/2021a;matlab) and do the following to add path:
addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox')
addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox/GIBBONS')
addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox/GIBBONS/lib')
addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox/GIBBONS/lib_ext')
addpath(genpath('/export/home/s2986149/sw/matlab/R2021a/toolbox'))
savepath /export/home/s2986149/sw/matlab/R2021a/toolbox/pathdef.m
From shell prompt, I do this:
cp /export/home/s123456/sw/matlab/R2021a/toolbox/pathdef.m /export/home/s123456/
Create a pbs script as follows:
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#!/bin/bash #PBS -m abe #PBS -M email@griffith.edu.au #PBS -N FEBio3_visco_ecoflex10 #PBS -q workq #PBS -l select=1:ncpus=6:mem=10gb,walltime=300:00:00 echo 'This script is running on:' hostname echo 'The data is:' date echo $PBS_O_WORKDIR module load misc/febio/3.6 #module load misc/baronsolver/20.4.14 module load anaconda3/2021.11 module load matlab/2021a source activate myenv pwd module list cd /export/home/s123456/FEA_scripts/Mat_Visco_Ecoflex10 pwd # The command(s) to be executed: cp ~/pathdef.m . matlab -nodisplay -nosplash -nodesktop -r "run('/export/home/s2986149/FEA_scripts/Mat_Visco_Ecoflex10/C_inverse_FEA_uniaxial_viscoelastic.m');exit;" echo 'Done' |