Introduction
OpenSim is software that lets users develop models of musculoskeletal structures and create dynamic simulations of movement
Usage
module load misc/opensim/3.2.0
Installation
module load cmake/3.5.0 module load library/lapackBlas/3.6.0 module load gcc/4.9.3 module load misc/simbody/3.5.4 download and copy the models first to: /sw/misc/opensim/3.2.0/src/opensim-core-3.2.0 cd /sw/misc/opensim/3.2.0/src/opensim-core-3.2.0/opensim-models-master cmake . -DCMAKE_C_COMPILER=/sw/gcc/4.9.3/bin/gcc -DCMAKE_CXX_COMPILER=/sw/gcc/4.9.3/bin/g++ -DCMAKE_INSTALL_PREFIX=/sw/misc/opensim/3.2.0/Models 2>&1 | tee cmakeLog2.txt Next if CFSQ file source is not available in /sw/misc/opensim/3.2.0/src/opensim-core-3.2.0/Vendors, edit the CMakeLists.txt and edit out reference to CFSQ. (Not sure about the implication of this but would love to get feedback) ##SUBDIRS(CFSQP lepton) SUBDIRS(lepton) cd /sw/misc/opensim/3.2.0/src/opensim-core-3.2.0 cmake . -DCMAKE_C_COMPILER=/sw/gcc/4.9.3/bin/gcc -DCMAKE_CXX_COMPILER=/sw/gcc/4.9.3/bin/g++ -DCMAKE_INSTALL_PREFIX=/sw/misc/opensim/3.2.0 -DSimbody_INCLUDE_DIR=/sw/misc/simbody/3.5.4/include 2>&1 | tee cmakeLog1.txt make 2>&1 | tee makeLog.txt make install 2>&1 | tee makeInstallLog.txt
Citation
PLEASE CITE THESE PAPERS
Delp SL, Anderson FC, Arnold AS, Loan P, Habib A, John CT, Guendelman E, Thelen DG. OpenSim: Open-source Software to Create and Analyze Dynamic Simulations of Movement. IEEE Transactions on Biomedical Engineering. (2007)