module load Delft3D/trunk2-ics2015

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
Source from: svn co https://svn.oss.deltares.nl/repos/delft3d/trunk delft3trunk

cd /sw/Delft3D/src
unzip D3D_trunk.zip
>>>>>>>>>>>
chmod +x ./scripts_lgpl/linux/update_version.sh
chmod +x ./scripts_lgpl/linux/make_revision.sh
>>>>>>>>>>>>
module load intel-ComposerXE/2015.2.164
module load intel-mpi/5.0.3.048
module load compilers/autoconf-2.69
module load NetCDF/4.3.3.1-intel_2015
export NETCDF_CFLAGS=/sw/NetCDF/4.3.3.1/ComposerXE2015/include
export NETCDF_LIBS=/sw/NetCDF/4.3.3.1/ComposerXE2015/lib
export I_MPI_F90=ifort
export I_MPI_F77=ifort
export UUIDLIBS_ADDITIONAL="/lib64/libuuid.so.1"
export UUIDLIBS=/lib64/libuuid.so.1
cd /sw/Delft3D/src/trunk2/src
sh autogen.sh -v 2>&1 | tee autoconfigLog.txt
CFLAGS='-O2' CXXFLAGS='-O2' FFLAGS='-O2' FCFLAGS='-O2' ./configure --prefix=/sw/Delft3D/unknown 2>&1 | tee configureLog.txt

>>>>>>>After the above step, add -luuid in the Makefile>>>>>
 vi Makefile

FCLIBS =   -L/sw/NetCDF/4.3.3.1/ComposerXE2015/lib:-L/sw...............snip ......-ldl -luuid

>>>>>>>>>

 make all 2>&1 | tee makeLog.txt
make install all 2>&1 | tee makeInstallLog.txt  

###This is only for flashlite. It won't work with gowonda
#! /bin/bash

### Template PBS script to submit Delft3d job to queue gccm
#PBS -m e
#PBS -N 3d12wvnew
#PBS  -l  walltime=200:00:00
#PBS  -l  nodes=1:ppn=4:intel,mem=30gb,vmem=30gb
#PBS  -A qris-gu

                              
source $HOME/.bashrc

module load delft3d-rev5624

cd /gpfs1/groups/gccmss/project/delft3d/3D/12waves_3_new/
##input data file
export MDWFILE=fm_wave_bcw.mdw
export ARGFILE=config_flow2d3d.xml


## RUN ##
# start flow
echo "=== start Delft3D-FLOW in the background ==="
#$MPIRUNEXEC -np $NHOSTS d_hydro.exe $ARGFILE &
#deltares_hydro.exe $ARGFILE -keepXML &
#deltares_hydro.exe $ARGFILE  &
d_hydro.exe $ARGFILE &

# start wave
echo "=== start Delft3D-WAVE in the background ==="
#$MPIRUNEXEC -np $NHOSTS wave.exe $MDWFILE 1 
wave.exe $MDWFILE 1
echo "=== calculation finished ==="
echo "Finished job "`date`