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Introduction
ProDeGe is a computational Protocol for fully-automated Decontamination of Genomes.
Usage
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module load perl/5.16.0
module load bioinformatics/blast+/2.2.28
module load R/3.0.2
module load bioinformatics/prodigal/2.6.2 |
Installation
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REQUIREMENTS
The following software must be previously installed before running the install script:
- Blast+ 2.2.28
- Perl 5.16.0 (with modules Bio::SeqIO and Bio::Perl)
- Prodigal 2.50
- R 3.0.1
module load perl/5.16.0
module load bioinformatics/blast+/2.2.28
module load R/3.0.2
module load bioinformatics/prodigal/2.6.2
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Reference
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- http://jgi.doe.gov/automating-microbial-genome-sequence-decontamination/
- prodege.jgi-psf.org/downloads/src