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ProDeGe is a computational Protocol for fully-automated Decontamination of Genomes.
Usage
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module load perl/5.16.0
module load bioinformatics/blast+/2.2.28
module load R/3.0.2
module load bioinformatics/prodigal/2.6.2 |
Installation
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REQUIREMENTS The following software must be previously installed before running the install script: - Blast+ 2.2.28 - Perl 5.16.0 (with modules Bio::SeqIO and Bio::Perl) - Prodigal 2.50 - R 3.0.1 module load perl/5.16.0 module load bioinformatics/blast+/2.2.28 module load R/3.0.2 module load bioinformatics/prodigal/2.6.2 |
Reference
- http://jgi.doe.gov/automating-microbial-genome-sequence-decontamination/
- prodege.jgi-psf.org/downloads/src