Introduction

Usage

module load matlab/2018b

Other versions available:

matlab/2019b
matlab/2021a

To get a full listing of all versions available on the cluster, please type:
module avail matlab

Matlab 2021a

Usage

module load matlab/2021a

 module list
Currently Loaded Modulefiles:
  1) matlab/2011a


Matlab will be loaded in the PATH.

Install Directory

/sw/Matlab/2021a

Sample PBS script

cat power_plot.m

%>>>>>>>>>>>>>>>>>>>
%
%    John Burkardt
%
addpath('/export/home/sNUMBER/MatlabFileDir')

  fprintf ( 1, '\n' );
  fprintf ( 1, 'POWER_PLOT\n' );
  fprintf ( 1, '  Plot some data, store it in a PNG file.\n' );

  n = 200;
  x = 1 : n;
  y = 2 * rand ( 1, n ) - 1;
  y = sign ( y ) .* y.^2;
  y = cumsum ( y, 2 );
  plot ( x, y );

  xlabel ( 'X', 'FontName', 'Helvetica', 'FontWeight', 'bold', ...
    'FontSize', 16 );

  ylabel ( 'Y', 'FontName', 'Helvetica', 'FontWeight', 'bold', ...
    'FontSize', 16, 'Rotation', 0 );

  title ( 'Power\_Plot', 'FontName', 'Helvetica', 'FontWeight', ...
    'bold', 'FontSize', 16 );

  print -dpng 'power_plot.png';

  fprintf ( 1, '\n' );
  fprintf ( 1, '  The data was stored in "power_plot.png".\n' );

  exit


%#>>>>>>>>>>>>>>>>>>>>>>>>>>>>>

cat pbs.00

#PBS -m abe
#PBS -M emailID@griffith.edu.au
#PBS -N Power_Plot
#PBS -l select=1:ncpus=2:mem=7g
#PBS -l walltime=6:00:00
source $HOME/.bashrc
cd  $PBS_O_WORKDIR
###module load  matlab/2009b  (if using matlab 2009b)
module load  matlab/2011a
echo "Starting job"
matlab -nodisplay -nodesktop -nosplash < /export/home/<sNumber>/pbs/matlab/power_plot.m
echo "Done with job"

Submit the job as follows:

qsub pbs.00

Matlab 2009b

Usage

module load matlab/2009b

 module list
Currently Loaded Modulefiles:
  1) matlab/2009b


Matlab will be loaded in the PATH.

Install Directory

/sw/Matlab/2009b

Sample PBS script

See http://confluence.rcs.griffith.edu.au:8080/display/GHPC/matlab#matlab-SamplePBSscript

Matlab 2017a Installation Notes

License number: 2150
Installation folder: /sw/Matlab/R2017a
Download Size: 6,885 MB
Installation Size: 18,252 MB
Products: MATLAB 9.2 (download)
Simulink 8.9 (download)
Bioinformatics Toolbox 4.8 (download)
Communications System Toolbox 6.4 (download)
Computer Vision System Toolbox 7.3 (download)
Control System Toolbox 10.2 (download)
Curve Fitting Toolbox 3.5.5 (download)
DSP System Toolbox 9.4 (download)
Embedded Coder 6.12 (download)
Financial Toolbox 5.9 (download)
Fuzzy Logic Toolbox 2.2.25 (download)
Global Optimization Toolbox 3.4.2 (download)
Image Acquisition Toolbox 5.2 (download)
Image Processing Toolbox 10.0 (download)
Mapping Toolbox 4.5 (download)
MATLAB Coder 3.3 (download)
MATLAB Compiler 6.4 (download)
MATLAB Compiler SDK 6.3.1 (download)
Model Predictive Control Toolbox 5.2.2 (download)
Neural Network Toolbox 10.0 (download)
Optimization Toolbox 7.6 (download)
Parallel Computing Toolbox 6.10 (download)
Partial Differential Equation Toolbox 2.4 (download)
Robust Control Toolbox 6.3 (download)
Signal Processing Toolbox 7.4 (download)
SimBiology 5.6 (download)
Simscape 4.2 (download)
Simscape Driveline 2.12 (download)
Simscape Electronics 2.11 (download)
Simscape Multibody 5.0 (download)
Simscape Power Systems 6.7 (download)

Your installation may require additional configuration steps.  
1. The following products require a supported compiler:  Simulink Coder 8.12 MATLAB Coder 3.3  
2. Simulink requires a C compiler for simulation acceleration, model reference, and MATLAB Function Block capabilities. It is recommended that you install a supported compiler on your machine.  
3. To accelerate computations with the following products, a supported compiler is required:  SimBiology 5.6  
4. MATLAB Compiler SDK 6.3.1 requires the following: 
 ? a supported compiler for creation of C and C++ Shared libraries
 ? a Java JDK for creation of Java packages

switch between the two versions

module switch matlab/2011a matlab/2009b

 module list
Currently Loaded Modulefiles:
  1) matlab/2009b

Matlab for Griffith researchers

Matlab is available through the software request system.

https://intranet.secure.griffith.edu.au/computing/software log into software requests and type matlab in the search software.

https://www102.griffith.edu.au/products.aspx?type=search&input=matlab

How may I add all subfolders in my matlab path?

Create a file called "startup.m" with contents similar to the example below

addpath(genpath('/export/home/s12345/scratch/GIBBON-3.5.0'))

Please have a look at: https://au.mathworks.com/help/matlab/ref/filesep.html

Create a path to the iofun folder on a Linux® platform.

iofun_dir = ['toolbox' filesep 'matlab' filesep 'iofun']

iofun_dir = 
'toolbox/matlab/iofun'

Another pbs script Usage Example

Open matlab (module load matlab/2021a;matlab) and do the following to add path:

addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox')

addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox/GIBBONS')

addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox/GIBBONS/lib')

addpath('/export/home/s2986149/sw/matlab/R2021a/toolbox/GIBBONS/lib_ext')

addpath(genpath('/export/home/s2986149/sw/matlab/R2021a/toolbox'))

savepath /export/home/s2986149/sw/matlab/R2021a/toolbox/pathdef.m

From shell prompt, I do this:

cp /export/home/s123456/sw/matlab/R2021a/toolbox/pathdef.m /export/home/s123456/

Create a pbs script as follows:

#!/bin/bash
#PBS -m abe
#PBS -M email@griffith.edu.au
#PBS -N FEBio3_visco_ecoflex10
#PBS -q workq
#PBS -l select=1:ncpus=6:mem=10gb,walltime=300:00:00
echo 'This script is running on:'
hostname
echo 'The data is:'
date
echo $PBS_O_WORKDIR
module load misc/febio/3.6
#module load misc/baronsolver/20.4.14 
module load anaconda3/2021.11
module load matlab/2021a
source activate myenv
pwd
module list
cd /export/home/s123456/FEA_scripts/Mat_Visco_Ecoflex10
pwd
# The command(s) to be executed:
cp ~/pathdef.m .
matlab -nodisplay -nosplash -nodesktop -r "run('/export/home/s2986149/FEA_scripts/Mat_Visco_Ecoflex10/C_inverse_FEA_uniaxial_viscoelastic.m');exit;"
echo 'Done'