Abaqus
Introduction
Usage on the cluster
module load abaqus/2017 module load abaqus/abq2017 (old cluster) There are only 2 licenses available for the Griffith community.
Useful Command Line Arguments
Launch abaqus python: ==================== abaqus cae noGUI >>> import sys >>> print sys.argv ['/sw/abaqus/2017/SIMULIA/CAE/2017/linux_a64/code/bin/ABQcaeK', '-cae', '-noGUI', '-lmlog', 'ON', '-tmpdir', '/tmp', '-academic', 'RESEARCH'] >>>
https://info.simuleon.com/blog/submitting-abaqus-commands-through-the-command-window
https://abaqus-docs.mit.edu/2017/English/SIMACAEEXCRefMap/simaexc-c-caeproc.htm
Sample pbs script
By default, Abaqus will run itself in the background, but that doesn’t work well with PBS, which will assume the job has completed when Abaqus goes into the background and end the job before Abaqus completes its job. So, you should always use the interactive option when running Abaqus from a PBS script. Modify the following example script to reflect the correct parameters for the resources you are using. We recommend that you use /scratch/snumber directory when running abaqus. #!/bin/bash #### PBS preamble #PBS -N abaqus_job #PBS -m abe #PBS -M YourName@griffith.edu.au # Request 2 processors on 1 physical machine #PBS -l select=1:ncpus=2:mem=12gb,walltime=5:00:00 #PBS -q workq #### End PBS preamble module load abaqus/2017 # Include the next three lines always if [ -e "${PBS_NODEFILE}" ] ; then # Print nodes the job is running on uniq -c $PBS_NODEFILE fi # Put your job commands after this line # Create a temporary directory for sample run cd $PBS_O_WORKDIR mkdir $PBS_O_WORKDIR/sample cd $PBS_O_WORKDIR/sample # Get a sample file from the Abaqus test suite source /usr/local/bin/s3proxy.sh abaqus fetch job=t5-std # requested 6gb per CPU, which is a little more than # what we ask for here, which is 5gb per CPU; # you should always add a little for program overhead. # abaqus job=jobname inp=t5-std cpus=2 memory=5gb
https://abaqus-docs.mit.edu/2017/English/IhrComponentMap/ihr-t-Abaqus-PBSTorqueRun.htm
https://arc-ts.umich.edu/flux/software/abaqus/
Sample interactive run
Interactive run: =========== qsub -I -l select=1:ncpus=2:mem=12gb,walltime=5:00:00 Once you are inside the job: cd $PBS_O_WORKDIR mkdir $PBS_O_WORKDIR/sample cd $PBS_O_WORKDIR/sample module load abaqus/2017 source /usr/local/bin/s3proxy.sh abaqus fetch job=t5-std abaqus job=jobname inp=t5-std cpus=2 memory=5gb interactive
Installation
https://linux.cc.iitk.ac.in/lininfo/Abaqus2017.html License information is: 27005@gc-prd-erslic.corp.griffith.edu.au mount 2017.AM_SIM_Abaqus_Extend.AllOS-1.iso /sw/abaqus/2017/src/CD/1 mount 2017.AM_SIM_Abaqus_Extend.AllOS-2.iso /sw/abaqus/2017/src/CD/2 mount 2017.AM_SIM_Abaqus_Extend.AllOS-3.iso /sw/abaqus/2017/src/CD/3 cd /sw/abaqus/2017/src/CD/1/1/SIMULIA_Documentation/AllOS/1 sh StartGUI.sh cd /sw/abaqus/2017/src/CD/2/2/SIMULIA_AbaqusServices/Linux64/1 sh StartGUI.sh cd /sw/abaqus/2017/src/CD/2/2/SIMULIA_AbaqusServices_CAA_API/Linux64/1 sh StartGUI.sh cd /sw/abaqus/2017/src/CD/2/2/SIMULIA_Abaqus_CAE/Linux64/1 sh StartGUI.sh (Not sure if this finished properly) cd /sw/abaqus/2017/src/CD/2/2/SIMULIA_Tosca/Linux64/1 sh StartGUI.sh cd /sw/abaqus/2017/src/CD/3/3/SIMULIA_Isight/Linux64/1 sh StartGUI.sh (Installation Failed) cd /sw/abaqus/2017/src/CD/3/3/SIMULIA_fe-safe cp SIM_fe-safe.AllOS.1-1.tar /sw/abaqus/2017/src cd /sw/abaqus/2017/src tar -xvf SIM_fe-safe.AllOS.1-1.tar cd /sw/abaqus/2017/src/SIM_fe-safe.AllOS/1/linux/linux cd /sw/abaqus/2017/src/SIM_fe-safe.AllOS/1/linux/linux tar -xvf linuxq_ins.tar /sw/abaqus/2017/src/SIM_fe-safe.AllOS/1/linux/linux/install Old Install notes ================= ./StartGUI.sh Verification is complete. Results can be found at: /sw/Abaqus/V6R2017x/SIMULIA/CAE/2017/InstallData/log/CODE/linux_a64/SIMULIA_Abaqus_CAE.media-2017_08_24-145600+1000/tmp/verification-results.html The Abaqus command for this release is: abq2017 The Abaqus commands directory can be found at: /sw/Abaqus/V6R2017x/SIMULIA/Commands The following media have been installed on your computer: Successful installation: Extended Product Documentation Abaqus Simulation Services Abaqus Simulation Services CAA API Abaqus/CAE Tosca Isight