Simbody
- Indy Siva
Owned by Indy Siva
Introduction
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Simbody is useful for internal coordinate and coarse grained molecule modeling, large scale mechanical models like skeletons,
and anything else that can be modeled as bodies interconnected by joints, acted upon by forces, and restricted by constraints.
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Usage
module load simbody/353 module load misc/simbody/3.5.4 module load simbody/360
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Installation
export CC=/sw/gcc/4.9.3/bin/gcc export CXX=/sw/gcc/4.9.3/bin/g++ #export LAPACK_DIR=/sw/library/lapack/lapack-3.6.0/3.6.0 #export BLAS_DIR=/sw/library/blas/CBLAS module load gcc/4.9.3 module load cmake/3.5.0 cmake . -DLAPACK_LIBRARIES=/sw/library/lapack/lapack-3.6.0/3.6.0/lib64/liblapack.so -DBLAS_LIBRARIES=/sw/library/blas/CBLAS/lib/cblas_LINUX.so -DCMAKE_INSTALL_PREFIX=/sw/simbody/353 2>&1 | tee cmakeLog.txt make 2>&1 | tee makelog.txt make test 2>&1 | tee makeTestlog.txt make install 2>&1 | tee makeInstalllog.txt
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simbody 3.5.4
module load cmake/3.5.0 module load library/lapackBlas/3.6.0 module load gcc/4.9.3 cmake . -DCMAKE_C_COMPILER=/sw/gcc/4.9.3/bin/gcc -DCMAKE_CXX_COMPILER=/sw/gcc/4.9.3/bin/g++ -DCMAKE_INSTALL_PREFIX=/sw/misc/simbody/3.5.4 2>&1 | tee cmakeLog.txt make 2>&1 | tee makeLog.txt make install 2>&1 | tee makeInstallLog.txt
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simbody 360
module list Currently Loaded Modulefiles: 1) library/gmp/6.0.0 2) library/mpfr/3.1.2 3) library/mpc/1.0.2 4) gcc/4.9.3 5) cmake/3.5.0 cd /sw/simbody/360/src/simbody-master export CC=/sw/gcc/4.9.3/bin/gcc export CXX=/sw/gcc/4.9.3/bin/g++ module load gcc/4.9.3 module load cmake/3.5.0 cmake . -DBUILD_PYTHON_WRAPPING=on -DCMAKE_INSTALL_PREFIX=/sw/simbody/360 2>&1 | tee cmakeLog.txt make 2>&1 | tee makelog.txt make test 2>&1 | tee makeTestlog.txt make install 2>&1 | tee makeInstalllog.txt
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