phylip

Introduction

PHYLIP is a free package of programs for inferring phylogenies.

http://www.phylip.com/

Usage

module load bioinformatics/phylip/3.69

Installation

cd /sw/bioinformatics/phylip/3.69/src
tar -zxvf phylip-3.69.tar.gz
cd /sw/bioinformatics/phylip/3.69/src/phylip-3.69/src

make install
cp -rp exe /sw/bioinformatics/phylip/3.69/
cp -rp doc /sw/bioinformatics/phylip/3.69/

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 make

 To use the PHYLIP v3.6 Makefile, type
     make install       to compile the whole package and install
                          the executables in ../exe, and then
                          remove the object files to save space
     make all           to compile the whole package but not install it
                          or remove the object files
     make put           to move the executables into ../exe
     make clean         to remove all object files and executables from the
                          current directory
     make dnaml         to compile and link one program, (in this example,
                          Dnaml) and leave the executable and object files
                          in the current directory (where the source code is).
                          You will have to move the executable into the
                          executables directory (e.g. "mv dnaml ../exe")
                          Note that the program name should be lower case.


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Reference

1. http://www.phylip.com/
2. http://evolution.gs.washington.edu/phylip/getme.html