phylip
Introduction
PHYLIP is a free package of programs for inferring phylogenies.
Usage
module load bioinformatics/phylip/3.69
Installation
cd /sw/bioinformatics/phylip/3.69/src tar -zxvf phylip-3.69.tar.gz cd /sw/bioinformatics/phylip/3.69/src/phylip-3.69/src make install cp -rp exe /sw/bioinformatics/phylip/3.69/ cp -rp doc /sw/bioinformatics/phylip/3.69/ >>>>>>>>>>>>>>>>>>>>>>>>>> make To use the PHYLIP v3.6 Makefile, type make install to compile the whole package and install the executables in ../exe, and then remove the object files to save space make all to compile the whole package but not install it or remove the object files make put to move the executables into ../exe make clean to remove all object files and executables from the current directory make dnaml to compile and link one program, (in this example, Dnaml) and leave the executable and object files in the current directory (where the source code is). You will have to move the executable into the executables directory (e.g. "mv dnaml ../exe") Note that the program name should be lower case. >>>>>>>>>>>>>>>>>
Reference
1. http://www.phylip.com/
2. http://evolution.gs.washington.edu/phylip/getme.html