Introduction

http://sourceforge.net/projects/soapdenovo2/
SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. SOAPdenovo2 is the successor of SOAPdenovo.

Usage

module load bioinformatics/soapdenovo2/2.04

Installation

cd /sw/bioinformatics/soapdenovo2/2.04r240
make

Citation

Cite the paper published in GigaScience
http://www.gigasciencejournal.com/content/1/1/18/

Reference

1. http://sourceforge.net/projects/soapdenovo2/