OBITools

Owned by Indy Siva
Last updated: Jun 27, 2016
1 min read

Introduction

The OBITools package is a set of programs specifically designed for analyzing NGS data in a DNA metabarcoding context, taking into account taxonomic information.

Usage

module load python/2.7.1-shared

 

Installation

module load python/2.7.1-shared
cd /tmp
wget https://pypi.python.org/packages/aa/96/fadaa0f7af3b257b4fcba4dd0750a55679e3e29eb85663f533886636f8c3/OBITools-1.2.6.tar.gz#md5=e298cfa30e41c8dc34137e237a0efe63
tar -zxvf OBITools-1.2.6.tar.gz
cd OBITools-1.2.6
python setup.py build
python setup.py install 2>&1 | tee obitoolsInstall.txt

 

 

 

Reference

 

  1. https://pypi.python.org/pypi/OBITools
  2. http://pythonhosted.org/OBITools/welcome.html#installing-the-obitools