prodigal

Introduction

Prodigal is fast, reliable protein-coding gene prediction for prokaryotic genomes.

Usage

module load bioinformatics/prodigal/2.6.2

 

Installation

cd /sw/bioinformatics/prodigal/2.6.2
git clone https://github.com/hyattpd/Prodigal.git
cd /sw/bioinformatics/prodigal/2.6.2/Prodigal
make
>>>>>>
cc -pedantic -Wall -O3 -c -o bitmap.o bitmap.c
gcc -pedantic -Wall -O3 -c -o dprog.o dprog.c
gcc -pedantic -Wall -O3 -c -o gene.o gene.c
gcc -pedantic -Wall -O3 -c -o main.o main.c
gcc -pedantic -Wall -O3 -c -o metagenomic.o metagenomic.c
gcc -pedantic -Wall -O3 -c -o node.o node.c
gcc -pedantic -Wall -O3 -c -o sequence.o sequence.c
gcc -pedantic -Wall -O3 -c -o training.o training.c
gcc -pedantic -Wall -O3 -o prodigal bitmap.o dprog.o gene.o main.o metagenomic.o node.o sequence.o training.o -lm
>>>>>>

 

Reference

 

  1. https://github.com/hyattpd/Prodigal