blast+
Introduction
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Usage
module load module load bioinformatics/blast+/2.2.28 Or module load bioinformatics/blast+/2.3.0
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Installation
cd /sw/bioinformatics/blast+/2.3.0/src wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.3.0+-src.tar.gz cd /sw/bioinformatics/blast+/2.3.0/src/ncbi-blast-2.3.0+-src/c++ ./configure --prefix=/sw/bioinformatics/blast+/2.3.0 make make install Config Details ============== =============================================================================== NCBI C++ Toolkit documentation: Online: http://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -O LIBRARIES: build as static by default FEATURES: GCC MT LFS DLL unix WinMain Linux PACKAGES: enabled: Z BZ2 PCRE GMP GMP GCRYPT GNUTLS OPENSSL KRB5 CURL BerkeleyDB BerkeleyDB++ PYTHON PYTHON26 PERL OpenGL GLUT GLEW EXPAT LIBXML LIBXSLT LIBEXSLT VDB JPEG PNG TIFF XPM FreeType disabled: UUID FUSE LocalZ LocalBZ2 LZO LocalPCRE NETTLE Sybase DBLib FreeTDS MySQL ODBC PYTHON25 PYTHON27 Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit MESA wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU SABLOT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC LocalVDB OECHEM SGE MUPARSER HDF5 UNGIF GIF FTGL MAGIC MIMETIC GSOAP AVRO Cereal MONGODB GMOCK PROJECTS: enabled: cgi serial objects dbapi app algo disabled: local_lbsm connext ncbi_crypt bdb ctools gui gbench Tools / flags / paths: /sw/bioinformatics/blast+/2.3.0/src/ncbi-blast-2.3.0+-src/c++/ReleaseMT/build/Makefile.mk Configuration header: /sw/bioinformatics/blast+/2.3.0/src/ncbi-blast-2.3.0+-src/c++/ReleaseMT/inc/ncbiconf_unix.h To build everything: cd /sw/bioinformatics/blast+/2.3.0/src/ncbi-blast-2.3.0+-src/c++/ReleaseMT/build && make all_r or simply run make in the current directory
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